Figure 3. Methylation signature of land and water form ofRiccia fluitans
A. The histogram tracks (A-D) depict the logarithmic mean of
expression patterns from the Illumina (A,B) and Nanopore (C,D)
sequencing of the frequency water (A,C) and land (B,D) forms ofRiccia fluitans . The heatmap (E) represents the methylation
levels of the transcript, with red indicating one methylation, orange
indicating two methylations, yellow indicating three methylations, green
indicating four, and blue indicating five methylations. The innermost
track (F) presents the correlation links between experimental groups,
where purple links depict intersected transcripts with methylations.
B. The Venn diagram depicts the number and percentage of unique
methylations in terrestrial (orange), aquatic (blue), and common to both
sets (dark orange) Riccia fluitans .
C. A logo diagram depicts the probability of a nucleotide
appearing in the first five positions of the significant methylation
motif in both the water (upper diagram) and land (lower diagram) forms.
The larger the letter representing the nucleotide, the higher the
probability of its appearance.
D. Upset plot of GO annotations for genes indicated high
methylation probability in water environment. High bars describe the
number of genes engaged in common GO terms. The dots and lines merge GO
terms with common genes.
E. Upset plot of GO annotations for genes indicated high
methylation probability in land environment. High bars describe the
number of genes engaged in common GO terms. The dots and lines merge GO
terms with common genes.